DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdx and RGD1560554

DIOPT Version :9

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:XP_038959853.1 Gene:RGD1560554 / 502576 RGDID:1560554 Length:364 Species:Rattus norvegicus


Alignment Length:352 Identity:181/352 - (51%)
Similarity:240/352 - (68%) Gaps:2/352 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   479 YTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYL 543
            ||.:.|.:|.|.|||:|||||.:.:.|.:.|..||...|::::||||:.|.|:|||||||||:.|
  Rat    12 YTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSL 76

  Fly   544 LLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPED 608
            .|.||.||.|.||.:|.|:||:.|:.:..|......|.....||.:|||.|:|||...:||||||
  Rat    77 GLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPED 141

  Fly   609 KLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAIL 673
            :|.:.|:||||..|.:..|.:.....|.|..:|::|:|.|::|..|:|.:|.|.|:||:||||||
  Rat   142 QLILCCKVSVVGPSFSTPGHNMTPTNKDPRQELADDIGELWENSLFTDCSLVVAGQEFRAHKAIL 206

  Fly   674 AARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNL--EKMADDLLAAADKYA 736
            ||||.||.|||||||.|...||:.|.|:..:|.|||:.||||||||:|  ..||.:||||||.|.
  Rat   207 AARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYD 271

  Fly   737 LEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTHS 801
            |:.||||||::||.||||:||..|||||||||.:.||.:.:|||..||::|.||..|::|:.:|.
  Rat   272 LQDLKVMCEDSLCRNLSVKTAVPTLILADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHP 336

  Fly   802 HLIAEAFRALATQQIPPIGPPRKRVKM 828
            ||..|||.:||:.|...:.|..||.|:
  Rat   337 HLAEEAFLSLASIQCSSLEPSLKRQKV 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 68/137 (50%)
BTB 645..749 CDD:279045 63/105 (60%)
BTB 656..752 CDD:197585 61/97 (63%)
SPOP_C 752..814 CDD:269807 34/61 (56%)
RGD1560554XP_038959853.1 MATH 16..153 CDD:351761 67/136 (49%)
BTB_POZ 165..292 CDD:365784 73/126 (58%)
BACK 287..352 CDD:421692 35/64 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000398
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24413
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X131
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.010

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