DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdx and spop

DIOPT Version :9

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_989003.1 Gene:spop / 394599 XenbaseID:XB-GENE-1003310 Length:374 Species:Xenopus tropicalis


Alignment Length:374 Identity:298/374 - (79%)
Similarity:337/374 - (90%) Gaps:2/374 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 VSRVPSPPLP-EVNT-PVAENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKL 520
            :|||||||.| |::: ||||:|||||:||||||||||||||||||||||||:||||||:||||||
 Frog     1 MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKL 65

  Fly   521 KWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKD 585
            ||||||||||||||||||||||||||||.||||||||||||||||.|||||||||||||||||||
 Frog    66 KWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKD 130

  Fly   586 WGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFD 650
            |||||||||||||||||||||:||||:|||||||.||||||||:.:...|||||:|:::||.|::
 Frog   131 WGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWE 195

  Fly   651 NEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYT 715
            |.:|:|..|.|.|:|||||||||||||.||:|||||||||.|.|||.|.||:.:|.|||:.||||
 Frog   196 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYT 260

  Fly   716 GKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFI 780
            |||.||:||||||||||||||||:||||||||||.|||||.|||.|||||||||||||.|.:|||
 Frog   261 GKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325

  Fly   781 NTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRVKMS 829
            |.||:||||||||::|:.:|.||:|||:|:||:.|.|.:||||||:|.|
 Frog   326 NYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 131/137 (96%)
BTB 645..749 CDD:279045 77/103 (75%)
BTB 656..752 CDD:197585 74/95 (78%)
SPOP_C 752..814 CDD:269807 45/61 (74%)
spopNP_989003.1 MATH_SPOP 28..166 CDD:239743 131/137 (96%)
Required for nuclear localization. /evidence=ECO:0000250 71..191 104/119 (87%)
BTB_POZ_SPOP-like 182..301 CDD:349588 87/118 (74%)
BACK_SPOP 297..367 CDD:350593 48/69 (70%)
Homodimerization. /evidence=ECO:0000250 297..355 42/57 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 191 1.000 Domainoid score I3172
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68354
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D864323at2759
OrthoFinder 1 1.000 - - FOG0000398
OrthoInspector 1 1.000 - - oto105065
Panther 1 1.100 - - O PTHR24413
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2421
SonicParanoid 1 1.000 - - X131
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.050

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