DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdx and Spop

DIOPT Version :10

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_001093966.1 Gene:Spop / 287643 RGDID:1311613 Length:374 Species:Rattus norvegicus


Alignment Length:374 Identity:298/374 - (79%)
Similarity:338/374 - (90%) Gaps:2/374 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 VSRVPSPPLP-EVNT-PVAENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKL 520
            :|||||||.| |::: ||||:|||||:||||||||||||||||||||||||:||||||:||||||
  Rat     1 MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKL 65

  Fly   521 KWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKD 585
            ||||||||||||||||||||||||||||.||||||||||||||||.|||||||||||||||||||
  Rat    66 KWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKD 130

  Fly   586 WGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFD 650
            |||||||||||||||||||||:||||:|||||||.||||||||:.:...|||||:|:::||.|::
  Rat   131 WGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWE 195

  Fly   651 NEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYT 715
            |.:|:|..|.|.|:|||||||||||||.||:|||||||||.|.|||.|.||:.||.|||:.||||
  Rat   196 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 260

  Fly   716 GKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFI 780
            ||||||:||||||||||||||||:||||||:|||.|||||.|||.|||||||||||||.|.:|||
  Rat   261 GKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325

  Fly   781 NTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRVKMS 829
            |.||:||:|||||::|:.:|.||:|||:|:||:.|.|.:||||||:|.|
  Rat   326 NYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 131/137 (96%)
BTB_POZ_roadkill-like 637..757 CDD:349654 89/119 (75%)
BACK_roadkill_like 752..825 CDD:350595 50/72 (69%)
SpopNP_001093966.1 MATH_SPOP 28..166 CDD:239743 131/137 (96%)
BTB_POZ_SPOP-like 182..301 CDD:349588 88/118 (75%)
BACK_SPOP 297..367 CDD:350593 47/69 (68%)

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