DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdx and spop-1

DIOPT Version :9

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_001022764.1 Gene:spop-1 / 176422 WormBaseID:WBGene00011815 Length:451 Species:Caenorhabditis elegans


Alignment Length:452 Identity:272/452 - (60%)
Similarity:335/452 - (74%) Gaps:38/452 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   408 LVLLVKCPN--SKEFCNAAANFCDK-------------RLPVNECQASQTARVTSNLHASSSTMA 457
            ::||.|..|  ||...|...:..||             ||...|........|:|....|:...:
 Worm     1 MILLAKFRNLYSKSRANDTISEGDKPEKATGDLEAGRNRLVSMEVGMGNDEVVSSGSGNSAHGRS 65

  Fly   458 VSRVPSP-------PLPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAG 515
            :|  |||       ||    .|||||||:||||||||:|||||||||||||||||||||||||||
 Worm    66 IS--PSPSSASHGDPL----LPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGEVLKSSTFSAG 124

  Fly   516 ANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRF 580
            .|||||||||:|||||||||:||||||||||.|||||||||||||||||||||||||||||||||
 Worm   125 CNDKLKWCLRINPKGLDEESRDYLSLYLLLVQCNKSEVRAKFKFSILNAKREETKAMESQRAYRF 189

  Fly   581 VQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQ-FKVPECKLSED 644
            ||||||||||||||||||||||||||.|:|:|||||||||::||::||:|:.| ||||.|:|::|
 Worm   190 VQGKDWGFKKFIRRDFLLDEANGLLPGDRLSIFCEVSVVAETVNVTGQTNVSQLFKVPPCRLADD 254

  Fly   645 LGNLFDNEKFSDVTL----SVGG--REFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDH 703
            :..||||::|||.||    .:|.  :.|..|||||||||.||:|||||.|:|...|...:.|::.
 Worm   255 MYGLFDNKQFSDFTLVCKSDLGSPTQTFHIHKAILAARSRVFSAMFEHHMQESDTNMTTVDDIEP 319

  Fly   704 EVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHS 768
            ||::|:|.::|||:...:|:||..|:||||||.|::||||||:|||..|:.:.|:.||:|||::|
 Worm   320 EVMRELLVYMYTGQTKYIEQMAQSLIAAADKYQLDRLKVMCEQALCYQLTTDNASLTLMLADMYS 384

  Fly   769 ADQLKAQTIDFINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPP---IGPPRKRVK 827
            |.||:|.:|:|||.:|.:||:|.||::::..|..|:.|.||||||||.||   :.||:||.|
 Worm   385 ASQLRAHSINFINVNANEVMDTEGWEDLVRDHPKLLEEVFRALATQQTPPVVLVQPPKKRPK 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 129/137 (94%)
BTB 645..749 CDD:279045 56/109 (51%)
BTB 656..752 CDD:197585 52/101 (51%)
SPOP_C 752..814 CDD:269807 30/61 (49%)
spop-1NP_001022764.1 MATH_SPOP 92..230 CDD:239743 129/137 (94%)
BTB 255..365 CDD:279045 56/109 (51%)
BTB 266..368 CDD:197585 52/101 (51%)
SPOP_C 368..430 CDD:269807 30/61 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 165 1.000 Domainoid score I2377
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68354
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D864323at2759
OrthoFinder 1 1.000 - - FOG0000398
OrthoInspector 1 1.000 - - oto17627
orthoMCL 1 0.900 - - OOG6_101509
Panther 1 1.100 - - LDO PTHR24413
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2421
SonicParanoid 1 1.000 - - X131
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.950

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