DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdx and btb-11

DIOPT Version :9

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_493890.1 Gene:btb-11 / 173481 WormBaseID:WBGene00019700 Length:297 Species:Caenorhabditis elegans


Alignment Length:152 Identity:35/152 - (23%)
Similarity:60/152 - (39%) Gaps:52/152 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   635 KVPECKLSEDL------GNLFDNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKL 693
            |.|:  :|.||      ..:|:..:..|..|.:|.::...:||.|:..||.|:.:|..:::|:  
 Worm   116 KPPQ--ISNDLKSQVSYDTMFEPSRKHDAVLLIGEKKLHVNKAFLSYHSDYFSDLFAEKVDEK-- 176

  Fly   694 NRVAITDVDHEVLKEMLRFIY-------------------------------------TGKAPNL 721
            |.:.|.:|.:|....::..||                                     |.|.||.
 Worm   177 NGIPIENVTYENFGLLMSVIYPEAVFSNHQNAEVLLELGNRFKIPAVMRHVENQIVGDTTKFPNK 241

  Fly   722 EKMADDLLAAADKYALEKLKVM 743
            .     |::.|:||.|:||..|
 Worm   242 R-----LISLAEKYGLQKLLAM 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743
BTB 645..749 CDD:279045 31/142 (22%)
BTB 656..752 CDD:197585 29/125 (23%)
SPOP_C 752..814 CDD:269807
btb-11NP_493890.1 BTB 130..232 CDD:366225 18/103 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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