DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9926 and Hdgfl2

DIOPT Version :10

Sequence 1:NP_650323.2 Gene:CG9926 / 41700 FlyBaseID:FBgn0038190 Length:231 Species:Drosophila melanogaster
Sequence 2:XP_006244351.1 Gene:Hdgfl2 / 171073 RGDID:621013 Length:678 Species:Rattus norvegicus


Alignment Length:241 Identity:56/241 - (23%)
Similarity:91/241 - (37%) Gaps:53/241 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MPN-FTIGDFVFAKLRRYRPWPGRILN-RIGA-----TAYSVYFYGSCNYAKVARKEVVDYEKNL 65
            ||: |..||.||||::.|..||.||.: ..||     ..|.::|:|:...|.:..|::..|:|..
  Rat     1 MPHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCK 65

  Fly    66 HRLGVVQQKGHVCNPSFRASMLQAR-EAFDNPDKDYGYYQQLAVNNGDCINAEDLGLEYLVTEDL 129
            .:.|         .|:.|....:.. |..:||...|.  ..|.|::.|....|         .||
  Rat    66 DKYG---------KPNKRKGFNEGLWEIQNNPHASYS--APLPVSSSDSEAPE---------ADL 110

  Fly   130 GNLLDEQAATEQVVAEKDVNEQVAVEQNVELNSLGQIFSNQEHEKDSEDSA-------------- 180
            |...|..       .||:....:.|.......:.|:..|:.:.:|:|:.|.              
  Rat   111 GGGSDAD-------KEKEARRVMTVTAVTTTATSGRTESDSDSDKNSDHSGLKRKTPVLKMSVSK 168

  Fly   181 ----SNCQLEEKDQSNSEVVKEQVSERHYSMAQIVSLKSKKLMDTP 222
                ::..|::...|.||...|..||...:..|..:.:.|.:...|
  Rat   169 RARKASSDLDQASVSPSEEDSESPSESEKTSDQDFTPEKKTIARAP 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9926NP_650323.2 PWWP 14..94 CDD:459964 24/86 (28%)
Hdgfl2XP_006244351.1 PWWP_HDGFL2 5..88 CDD:438977 25/91 (27%)
LEDGF 477..574 CDD:463284
Blue background indicates that the domain is not in the aligned region.

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