DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Hoxa5

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_077365.1 Gene:Hoxa5 / 79241 RGDID:620609 Length:381 Species:Rattus norvegicus


Alignment Length:466 Identity:107/466 - (22%)
Similarity:156/466 - (33%) Gaps:153/466 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 SPPPGERNVPGSPPQTPPATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQQHL---QAPHPHPHLS 113
            ||....|.|.|:.|.:......|.|..|..|......|...:  ...||:|:   :.|:...::.
  Rat    11 SPTERRRRVAGTRPGSARHPSRLHPTPPLLHEFTSRGHQAGF--TTGQQKHVIRSRTPYLGAYVG 73

  Fly   114 PAQQHV-----LHQHLLMQQQHPGTPKSHQDIQELLQRLH-------------------HNAAMA 154
            ..:.||     :|..|........|..||:....:.:::.                   ||....
  Rat    74 GNRVHVPVISIIHHKLCKGAIDAQTTASHKSSTHIKKQMSSYFVNSFCGRYPNGPDYQLHNYGDH 138

  Fly   155 SGLSPLQTRLSPETEQPQ-------MAVSLKRERSPAPPAMEQAEN--------PAQRIQPPHTP 204
            |.:|. |.|.|......:       |.:|:.|..|....:.|:|.:        ||:        
  Rat   139 SSVSE-QFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAAGASAAPAE-------- 194

  Fly   205 PKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVRP 269
                 |:.|||::|                ...|||:             |:      |...|.|
  Rat   195 -----PRYSQPATS----------------THSPPPD-------------PL------PCSAVAP 219

  Fly   270 FPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAG--HV----- 327
               .||......|:..|.:                            ...|:..||  |:     
  Rat   220 ---SPGSDSHHGGKNSLGN----------------------------SSGASANAGSTHISSREG 253

  Fly   328 LGPAAAAA--AAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKR 390
            :|.|:||.  |.|......||..|:|...... |:|||:...|   ..|...|.      .:.||
  Rat   254 VGTASAAEEDAPASSEQAGAQSEPSPAPPAQP-QIYPWMRKLH---ISHDNIGG------PEGKR 308

  Fly   391 IRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEK--- 452
            .|||::..|.|:||..|..|:|:....|..:|..|.|||.|:|:||||||.|.|:    |.|   
  Rat   309 ARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK----DNKLKS 369

  Fly   453 ---GGEGGSQR 460
               ...||:.|
  Rat   370 MSMAAAGGAFR 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 27/55 (49%)
Hoxa5NP_077365.1 Homeodomain 307..363 CDD:459649 27/55 (49%)

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