DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Hoxd9

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001166940.1 Gene:Hoxd9 / 688999 RGDID:1582908 Length:343 Species:Rattus norvegicus


Alignment Length:339 Identity:86/339 - (25%)
Similarity:123/339 - (36%) Gaps:105/339 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 PPAMEQAENPAQRIQPPHTPPK----SVSPQSS-----------QPSSSPTLL-ISSPHATPPQQ 233
            ||.......||.....|....:    |.:|:||           ||.::.|:. :..|:.:||..
  Rat    30 PPGPGTQGRPAGVADGPAAAAEFASCSFAPKSSVFSASWSAVAAQPPAAATMSGLYHPYVSPPPL 94

  Fly   234 QQQQP---PPNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGGP-PMPQGQPGLPDIKALPP 294
            ...:|   ..::.:|....|||||.....|....|       |.||| |:|  .||.|   |...
  Rat    95 AAAEPGRYVRSWMEPLPGFPGGAGGGGGSGGGGGG-------GSGGPGPVP--SPGGP---ANGR 147

  Fly   295 YINAPPELPPQHNPHLIAAA----------QFQMAAALQAGHVLGP------------AAAAAAA 337
            :....||......|...:.:          :.:.:||.::....||            |||||||
  Rat   148 HYGIKPETGAAPAPSAASTSSSTSSSSSSKRTECSAARESQGSGGPEFPCNSFLRDKAAAAAAAA 212

  Fly   338 AG----------------LPPHAAQFMPNPGMARDSYQLYP----------------WLLSRHGR 370
            ||                ..|.|....|:||......:..|                |:.:|..|
  Rat   213 AGNGPGVGIGTGPGTGGSSEPSACSDHPSPGCPLKEEEKQPPQPPQQQLDPNNPAANWIHARSTR 277

  Fly   371 IFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVW 435
                               :.|..::..|.|:||..|..|.|:....|..:|:.|||:|.|||:|
  Rat   278 -------------------KKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIW 323

  Fly   436 FQNRRTKHKRMQQE 449
            |||||.|.|:|.:|
  Rat   324 FQNRRMKMKKMSKE 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 24/55 (44%)
Hoxd9NP_001166940.1 Hox9_act 1..>155 CDD:461369 35/136 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 113..196 24/94 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 220..267 6/46 (13%)
Homeodomain 277..328 CDD:459649 22/69 (32%)

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