DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Barx2

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001414382.1 Gene:Barx2 / 679701 RGDID:1584840 Length:290 Species:Rattus norvegicus


Alignment Length:267 Identity:76/267 - (28%)
Similarity:110/267 - (41%) Gaps:75/267 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 PAGLVRPFPM-GPGGPPMPQGQPGLPDIKALPPYIN----APPELPPQHNPHLIAAAQFQMAAAL 322
            |:.:|||.|: ...|.|..:..|.|..|...|..|:    ..|.|.|.:..|.:||.    |||.
  Rat    49 PSLVVRPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPTGPGLTPVNTRHAVAAE----AAAA 109

  Fly   323 QAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRK 387
            .|      ||||||||..|...|.      .:.:|....|                   .|..:|
  Rat   110 AA------AAAAAAAAETPGGEAL------ASSESETEQP-------------------TPRQKK 143

  Fly   388 PKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRM------ 446
            |:|.||.|:..||:.||..|:..:|:...:|..|||:|.|::.|||.|:||||.|.|:|      
  Rat   144 PRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQ 208

  Fly   447 ---------------------QQEDEKGGEGGSQRNMHNGSGDEDDDE-------LIDMEMDECP 483
                                 :.|::...:..||..:.:..|.|:..:       |:.:|:.| |
  Rat   209 EAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQSQEQLGSLQGQEEPRDPQEPKACLVPLEVAE-P 272

  Fly   484 SDEEHEL 490
            |.:..||
  Rat   273 SQQPQEL 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 25/55 (45%)
Barx2NP_001414382.1 None

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