Protein Alignment ems and Cdx2

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_076453.1
• Gene: Cdx2 / 66019
• RGDID: 621234
• Length: 310
• Species: Rattus norvegicus
• Alignment Length: 291
• Identity: 71/291 - (24%)
• Similarity: 103/291 - (35%)
• Gaps: 96/291 - (32%)

  Fly   194 PAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKP--AMMH------- 249
            |...:.||..|.......::..:::..|           ...|.|.|::|..  |.:.
  Rat    28 PQNFVSPPQYPDYGGYHVAAAAAAAANL-----------DSAQSPGPSWPTAYGAPLREDWNGYA 81

  Fly   250 PGGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPEL----PPQHNPHL 310
            ||||.         |.......:..|.|....|             .::|.|.    .|.|:||.
  Rat    82 PGGAA---------AANAVAHGLNGGSPAAAMG-------------YSSPAEYHAHHHPHHHPHH 124

  Fly   311 IAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHR 375
            .|||....:..||..:. ||...||.||     |.|..|: |..|:   |..|:
  Rat   125 PAAAPSCASGLLQTLNP-GPPGPAATAA-----AEQLSPS-GQRRN---LCEWM----------- 168

  Fly   376 FPGSFLVPPFRKP--------------KRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLN 426
                      |||              .:.|..::..|.|:||..|..::|:....:..||..|.
  Rat   169 ----------RKPAQPSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLG 223

  Fly   427 LSETQVKVWFQNRRTKH-----KRMQQEDEK 452
            |||.|||:||||||.|.     |::||:.::
  Rat   224 LSERQVKIWFQNRRAKERKINKKKLQQQQQQ 254

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	23/60 (38%)
Cdx2	NP_076453.1	Caudal_act	13..178	CDD:461413	45/213 (21%)
		Homeodomain	187..242	CDD:459649	23/54 (43%)