DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and SHOX2

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_003021.3 Gene:SHOX2 / 6474 HGNCID:10854 Length:355 Species:Homo sapiens


Alignment Length:164 Identity:50/164 - (30%)
Similarity:64/164 - (39%) Gaps:45/164 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   325 GHVLGPAAAAAAAAGLPP------HAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHR-------- 375
            |.|.|..|...|..|..|      .||:....||..|          ...||..|.:        
Human    76 GGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPR----------LTEGRRKPTKAEVQATLL 130

  Fly   376 FPGS---FLVPPFR------------------KPKRIRTAFSPSQLLKLEHAFESNQYVVGAERK 419
            .||.   |||.|..                  |.:|.||.|:..||.:||..|:...|.....|:
Human   131 LPGEAFRFLVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMRE 195

  Fly   420 ALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKG 453
            .|:|.|.|||.:|:|||||||.|.::.:.:..||
Human   196 ELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKG 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 26/55 (47%)
SHOX2NP_003021.3 Homeodomain 165..221 CDD:459649 26/55 (47%)
OAR 335..351 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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