Protein Alignment ems and hoxc13a

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_571618.1
• Gene: hoxc13a / 58059
• ZFINID: ZDB-GENE-000822-4
• Length: 306
• Species: Danio rerio
• Alignment Length: 365
• Identity: 76/365 - (20%)
• Similarity: 119/365 - (32%)
• Gaps: 146/365 - (40%)

  Fly   129 QHPGTPKSHQDIQELLQRLHHNAAMASGLSPLQTRLSPETEQPQMAVSLKRERSPAPPAMEQAEN 193
            :|.||..:||            .::.|.:|      ||||.:          :.|||
Zfish    57 RHSGTIATHQ------------GSVYSDIS------SPETGR----------QCPAP-------- 85

  Fly   194 PAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPHATP---------PQQQQQQPPPNYPKPAMMH 249
                                |.|||.:|....|...|         .....||.|.:|      |
Zfish    86 --------------------QTSSSASLSYGYPFGNPYYGCRLSHSHNVNLQQKPCSY------H 124

  Fly   250 PGGAGPMMMPGMPPAGL---VRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLI 311
            |..........:|...|   .:.|...|......|..||..|:..:|. |:..||  |:|:
Zfish   125 PAEKYAETSSALPTEELSSRAKEFAFYPSLASSYQAVPGYLDMSVVPS-ISVHPE--PRHD---- 182

  Fly   312 AAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSR--HGRI--- 371
                                      |.:|             .:.||  .|.||.  .|::
Zfish   183 --------------------------ALIP-------------MEGYQ--HWALSNGWDGQVYCS 206

  Fly   372 -------------FPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQ 423
                         ||...|....|..:|:.::.|..::..||.:||..:.:::::...:|:.::.
Zfish   207 KEQTQSSHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKIQLKELEKEYAASKFITKDKRRRISA 271

  Fly   424 NLNLSETQVKVWFQNRRTKHKRMQQEDEKGGEGGSQRNMH 463
            ..||||.||.:||||||.|.|:...:.:      :..:||
Zfish   272 TTNLSERQVTIWFQNRRVKEKKFVSKSK------TNNHMH 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	19/55 (35%)
hoxc13a	NP_571618.1	HoxA13_N	34..144	CDD:463521	29/148 (20%)
		Homeodomain	237..293	CDD:459649	19/55 (35%)