DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ems and hoxc9a

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571603.3 Gene:hoxc9a / 58043 ZFINID:ZDB-GENE-000328-5 Length:270 Species:Danio rerio


Alignment Length:281 Identity:67/281 - (23%)
Similarity:97/281 - (34%) Gaps:69/281 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 PAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQ--------QQQQQPP 239
            |.|...|.|:.|:....|  .||  |...|..|..|.:.::..|:...|.        :...:|.
Zfish    50 PTPLVPECADYPSCSFAP--KPP--VFTTSWAPVHSQSSVVYHPYTHQPHLGTDSRYVRSWLEPI 110

  Fly   240 PNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPP 304
            |.    .:..||.||.....|:.|.....|    ..|..:  |..|......|  |.:|......
Zfish   111 PG----TVSFPGYAGNSRHYGLKPDTFQDP----RAGDCL--GSNGRTYTDYL--YCSAVDIREK 163

  Fly   305 QHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHG 369
            |.|                   ...|...:.::.......|:..||..:|.       |:.:|..
Zfish   164 QQN-------------------TPSPETESLSSGKHKDDKAELDPNNPVAN-------WIHARST 202

  Fly   370 RIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKV 434
            |                   :.|..::..|.|:||..|..|.|:....|..:|:.|||:|.|||:
Zfish   203 R-------------------KKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKI 248

  Fly   435 WFQNRRTKHKRMQQEDEKGGE 455
            ||||||.|.|:|.:|.....|
Zfish   249 WFQNRRMKMKKMNKEKNDSKE 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 24/55 (44%)
hoxc9aNP_571603.3 Hox9_act 11..189 CDD:461369 33/173 (19%)
Homeodomain 203..251 CDD:459649 19/66 (29%)

Return to query results.
Submit another query.