DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and barhl1b

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001018142.1 Gene:barhl1b / 553186 ZFINID:ZDB-GENE-060118-2 Length:323 Species:Danio rerio


Alignment Length:250 Identity:67/250 - (26%)
Similarity:98/250 - (39%) Gaps:57/250 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 PGGAGPMMMPGMPPAGLVR-PFPMGP--------GGPPMP-----------QGQPGLPDIKALPP 294
            ||  .|::..|....|..| |....|        ..||.|           ||.|     .|...
Zfish    20 PG--SPVISKGDSLVGECRSPLEFSPRSDLESGCSSPPSPRRECVEDAAQRQGHP-----LAYAS 77

  Fly   295 YINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQ 359
            ::        ||.|....:....:|::.....:|......||.|   |:::...|.....|.:.:
Zfish    78 HL--------QHGPISAGSQPRTVASSFLIRDILADCKPLAACA---PYSSNGQPTQEAGRLASK 131

  Fly   360 LYPWLLSR-HGRIF-----------PHRFPGSFLVPPFR--KPKRIRTAFSPSQLLKLEHAFESN 410
            :...|:.: |....           ......|...|..|  ||::.||||:..||.:||.:||..
Zfish   132 IADDLIEKIHSNSSSDSEYKVKEEGDREISSSRDSPQVRLKKPRKARTAFTDHQLAQLERSFERQ 196

  Fly   411 QYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKR-----MQQEDEKGGEGGSQR 460
            :|:...:|..||.:|||::||||.|:||||||.||     ::...|.|.....||
Zfish   197 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQR 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 28/55 (51%)
barhl1bNP_001018142.1 Homeodomain 175..231 CDD:459649 28/55 (51%)

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