DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ems and hoxb3

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001015971.1 Gene:hoxb3 / 548725 XenbaseID:XB-GENE-482576 Length:386 Species:Xenopus tropicalis


Alignment Length:259 Identity:65/259 - (25%)
Similarity:97/259 - (37%) Gaps:69/259 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 PQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGP 274
            ||.|.|:||        |.....|:.        ..::...|.:||::.........:||     
 Frog    28 PQQSFPTSS--------HMDNEFQRS--------SCSLQSLGHSGPLVKAKNLNGSCMRP----- 71

  Fly   275 GGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAG 339
             .....|.||                 |.|..||.....:....|:..:      |:.|.:.|:|
 Frog    72 -NLSSEQSQP-----------------LSPTANPSSNTNSSSSQASLSK------PSPAKSQASG 112

  Fly   340 LPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFP---------GSFLVPPFRKPKRIRTAF 395
            .|.              |.|::||:............|         |....|.....||.|||:
 Frog   113 SPA--------------SKQIFPWMKESRQNSKQKSSPPAPAAESCGGDRSPPGSSASKRARTAY 163

  Fly   396 SPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQ-EDEKGGEGGS 458
            :.:||::||..|..|:|:....|..:|..|||||.|:|:||||||.|:|:.|: :......||:
 Frog   164 TSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKVKGMSSSSGGA 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 28/55 (51%)
hoxb3NP_001015971.1 Homeodomain 157..213 CDD:459649 28/55 (51%)
DUF4074 325..384 CDD:463833
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.