DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and nkx3.3

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001013342.2 Gene:nkx3.3 / 503746 ZFINID:ZDB-GENE-050306-27 Length:240 Species:Danio rerio


Alignment Length:68 Identity:35/68 - (51%)
Similarity:42/68 - (61%) Gaps:0/68 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   384 PFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQ 448
            |....||.|.|||.:|:.:||..|...:|:.|.||..||..|.|:|||||:||||||.|.||.|.
Zfish   107 PKSSKKRSRAAFSHAQVYELERRFNLQRYLSGPERADLAGALKLTETQVKIWFQNRRYKTKRRQM 171

  Fly   449 EDE 451
            ..|
Zfish   172 AAE 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 30/55 (55%)
nkx3.3NP_001013342.2 Homeodomain 112..168 CDD:459649 30/55 (55%)

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