DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Emx1

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001414509.1 Gene:Emx1 / 500235 RGDID:1564002 Length:290 Species:Rattus norvegicus


Alignment Length:311 Identity:107/311 - (34%)
Similarity:131/311 - (42%) Gaps:90/311 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 PAQRIQPPHTP-PKSVSPQSS-------QPSSSPTLLISS--------------------PHATP 230
            |.....|.|.. |::..|.||       ||::.....|.|                    |.|..
  Rat     8 PRTAAAPGHRAFPRAPLPHSSSAAATMFQPATKRGFTIESLVAKDGGTGGSPGSGGAGSHPLAVA 72

  Fly   231 PQQQQQQPPP-NYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPP 294
            ..::..:|.. |||     ||..|....:.|.|.|..........|||.:           ..|.
  Rat    73 ASEEPLRPTALNYP-----HPSAAETAFVSGFPAAAAAGASRSLYGGPEL-----------VFPE 121

  Fly   295 YINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPH---AAQFMPNPGMARD 356
            .:|.|                   |..:...|.||.::..      |||   :||.       ||
  Rat   122 AMNHP-------------------ALTVHPAHQLGSSSLQ------PPHSFFSAQH-------RD 154

  Fly   357 SYQLYPWLLSRHGRIFPHRF-------PGSFLVPPF-RKPKRIRTAFSPSQLLKLEHAFESNQYV 413
            ....|||:|  ..|.|.|||       .|..|..|| ||||||||||||||||:||.|||.|.||
  Rat   155 PLHFYPWVL--RNRFFGHRFQASEVPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYV 217

  Fly   414 VGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKGGEGGSQRNMHN 464
            ||||||.||.:|:||||||||||||||||:||.:.|:|.......::..|:
  Rat   218 VGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKLEEEGPESEQKKKGSHH 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 46/55 (84%)
Emx1NP_001414509.1 None

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