Protein Alignment ems and Hoxb6

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001385781.1
• Gene: Hoxb6 / 497986
• RGDID: 1562142
• Length: 224
• Species: Rattus norvegicus
• Alignment Length: 284
• Identity: 71/284 - (25%)
• Similarity: 96/284 - (33%)
• Gaps: 102/284 - (35%)

  Fly   204 PPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGM------P 262
            |....|.|.|.....|  |.||.:|.|.:        :||.|.     |.||....|.      |
  Rat    11 PVTLASGQESFLGQLP--LYSSGYADPLR--------HYPAPY-----GPGPGQDKGFAASSYYP 60

  Fly   263 PAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHV 327
            |||         ||    .|:....|....|.:....
  Rat    61 PAG---------GG----YGRAAPCDYGPAPAFYREK---------------------------- 84

  Fly   328 LGPAAAAAAAAGLPPHAAQFMPNP---GMARD------------SYQLYPWLLSRHGRIFPHRFP 377
              .||.|.:.|..||   .|.|.|   ..|:|            |..:|||:...:.      ..
  Rat    85 --DAACALSGADEPP---PFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNS------CN 138

  Fly   378 GSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTK 442
            .|...|..|:.::..|.:   |.|:||..|..|:|:....|..:|..|.|:|.|:|:||||||.|
  Rat   139 SSSFGPSGRRGRQTYTRY---QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 200

  Fly   443 HKR-----------MQQEDEKGGE 455
            .|:           .::|:||..|
  Rat   201 WKKESKLLSASQLSAEEEEEKPAE 224

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	22/55 (40%)
Hoxb6	NP_001385781.1	Homeodomain	147..203	CDD:459649	23/58 (40%)