DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Tlx3

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001414519.1 Gene:Tlx3 / 497881 RGDID:1564190 Length:291 Species:Rattus norvegicus


Alignment Length:277 Identity:78/277 - (28%)
Similarity:106/277 - (38%) Gaps:69/277 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 PSSSPTLLISSPHATPP----QQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPG 275
            |:|:.|     ||...|    ..|....|.....||...|.||..:   |.||.|  ||   |..
  Rat     4 PASAQT-----PHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYL---GGPPGG--RP---GAA 55

  Fly   276 GPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGL 340
            .|.:|....||                          .|.|:.|.:......|.||......|..
  Rat    56 YPSLPASFAGL--------------------------GAPFEDAGSYSVNLSLAPAGVIRVPAHR 94

  Fly   341 P---------PHAAQFMPN-PGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRI---- 391
            |         |.|...||: |.::......:||:.|.. |....||..:..:.||...:||    
  Rat    95 PLPGAVPPPLPSALPAMPSVPTVSSLGGLNFPWMESSR-RFVKDRFTAAAALTPFTVTRRIGHPY 158

  Fly   392 -----------RTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKR 445
                       ||:||..|:.:||..|...:|:..|||.|||::|.:::.|||.||||||||.:|
  Rat   159 QNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRR 223

  Fly   446 MQQEDEKGGEGGSQRNM 462
            ...|:.:.....:.|.|
  Rat   224 QTAEEREAERQQASRLM 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 29/70 (41%)
Tlx3NP_001414519.1 None

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