DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and hbn

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster


Alignment Length:453 Identity:81/453 - (17%)
Similarity:119/453 - (26%) Gaps:249/453 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MIPPVPTAAAAVMMPTPKQKIGFSIESIVGNDVSTAGGNSTPDLSGPQSPPPGERNVPGSPPQTP 68
            ::||....|.....|..:.:..:||:.|:||                      :..:..|     
  Fly    15 IMPPAMRPAPVQESPVSRPRAVYSIDQILGN----------------------QHQIKRS----- 52

  Fly    69 PATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQQHLQAPHPHPHLSPAQQHVLHQHLLMQQQHPGT 133
                    .:|...|:..|.||    |||    |:.  |.|...|....|:.||   .||||.  
  Fly    53 --------DTPSEVLITHPHHG----HPH----HIH--HLHSSNSNGSNHLSHQ---QQQQHS-- 94

  Fly   134 PKSHQDIQELLQRLHHNAAMASGLSPLQTRLSPETEQPQMAVSLKRERSPAPPAMEQAENPAQRI 198
                       |:.||:              ..:.:|.|:.|..|||.||.              
  Fly    95 -----------QQQHHS--------------QQQQQQQQLQVQAKREDSPT-------------- 120

  Fly   199 QPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPP 263
                                                                             
  Fly   121 ----------------------------------------------------------------- 120

  Fly   264 AGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVL 328
                                             |....|...::.        :::::|..||.|
  Fly   121 ---------------------------------NTDGGLDVDNDD--------ELSSSLNNGHDL 144

  Fly   329 GPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRT 393
            ..                 |..|                                  ||.:|.||
  Fly   145 SD-----------------MERP----------------------------------RKVRRSRT 158

  Fly   394 AFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQ---EDEKG 453
            .|:..||.:||.|||..||.....|:.||..|:|||.:|:|||||||.|.::.::   :|:.|
  Fly   159 TFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNRRAKWRKREKFMNQDKAG 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 29/55 (53%)
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 29/55 (53%)

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