DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and abd-A

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster


Alignment Length:196 Identity:38/196 - (19%)
Similarity:68/196 - (34%) Gaps:41/196 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 DMNKVG--PGQYWMYTEEYFYPRQFYIIGAGPSFNNGTRN----STEPLQYLIAS-----DANRL 214
            |.|:.|  ....|:|.:.||          |.|.|..:.|    :..|.|.:.||     |.:..
  Fly    27 DDNEYGGMTHDQWLYVQMYF----------GHSSNGTSVNVATAAVAPAQQVGASQSASADESPP 81

  Fly   215 SLMVYARDPLVFFQKYNKEVVEFMNGHGFGGNVFWNSPKPIYQGPDCEW------------PSEK 267
            ..:|...:.:...:....|:.|...........:.:...|:....|.:.            .|.|
  Fly    82 GGVVADVEQMKDLKPPQNEIPELAEARCIDDAQYEHDSAPVNPVSDIDMKMETNSQETSSNTSRK 146

  Fly   268 EVFARRVLKNQEMNERNKNGTSDPILSGMPLADMI------RDPKRTLERLVGTKALQQATAGIT 326
            |:.|  |.:..|..:..:||...|:::...||..:      |:...:|.|:...:..:..||.:.
  Fly   147 EMVA--VAEMAETFQTPENGLEPPVIAAPELASPLHGDINAREVSESLLRMEDERQTETETADLD 209

  Fly   327 A 327
            |
  Fly   210 A 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649
abd-ANP_732176.1 Homeodomain 399..455 CDD:459649
Abdominal-A 456..478 CDD:403567
Blue background indicates that the domain is not in the aligned region.

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