DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Rx

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster


Alignment Length:132 Identity:29/132 - (21%)
Similarity:45/132 - (34%) Gaps:47/132 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 RDMNKVGP--GQYWMYTEE-------YFYPRQFYIIGA----GPSFNNGTRNSTEPLQYLIASDA 211
            ::..||.|  |::::||..       ...|..|.|:.|    ||:...|..        :|...|
  Fly   153 KNHGKVIPMDGEFFVYTRHEPVGVCGQIIPWNFPILMAAWKFGPALATGNT--------IILKPA 209

  Fly   212 NRLSLMVYARDPLVFFQKYNKE------VVEFMNGHGFGGNVFWNSP--------------KPIY 256
            .:.||..      ::..:..||      ||..:.|:|..|....:.|              |.|.
  Fly   210 EQTSLTA------LYMAQLTKEAGFPPGVVNVVPGYGDAGAALVDHPDVDKVAFTGSTEVGKKIQ 268

  Fly   257 QG 258
            ||
  Fly   269 QG 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649
RxNP_726006.3 Homeodomain 560..616 CDD:459649
OAR 876..892 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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