DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Cdx1

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001406562.1 Gene:Cdx1 / 364883 RGDID:621233 Length:273 Species:Rattus norvegicus


Alignment Length:276 Identity:67/276 - (24%)
Similarity:104/276 - (37%) Gaps:81/276 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 VSPQSSQPSS----SPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVR 268
            |.|..::|||    .||.....|...|||.      |::.....:.|..|        ||.....
  Rat    13 VYPGPARPSSLGLGPPTYAPPGPAPAPPQY------PDFAGYTHVEPAPA--------PPPTWAA 63

  Fly   269 PFP---------MGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQA 324
            |||         .|| ||.:|...|.  .:...||...:|...||...|.::|.:          
  Rat    64 PFPAPKDDWAAAYGP-GPAVPAASPA--PLAFGPPPDFSPVPAPPGPGPGILAQS---------- 115

  Fly   325 GHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSR--------HGRIFPHRFPGSFL 381
              :.||.|.:               :||:.|.:  .|.|:...        .|:.          
  Rat   116 --LGGPGAPS---------------SPGVQRRT--PYEWMRRNVAAAGGGGSGKT---------- 151

  Fly   382 VPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRM 446
                |...:.|..::..|.|:||..|..::|:....:..||.||.|:|.|||:||||||.|.:::
  Rat   152 ----RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKV 212

  Fly   447 QQEDEKGGEGGSQRNM 462
            .::.::..:...|:.|
  Rat   213 NKKKQQQQQQQQQQPM 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 23/55 (42%)
Cdx1NP_001406562.1 Caudal_act 13..140 CDD:461413 40/172 (23%)
Homeodomain 156..211 CDD:459649 23/54 (43%)

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