Protein Alignment ems and Gsx2

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001131035.2
• Gene: Gsx2 / 364140
• RGDID: 1308047
• Length: 305
• Species: Rattus norvegicus
• Alignment Length: 327
• Identity: 102/327 - (31%)
• Similarity: 129/327 - (39%)
• Gaps: 93/327 - (28%)

  Fly   220 TLLISSPHATPPQQQQQQPPPNY------PKPAMMHPGGAG-PMMMPG----------------M 261
            :|:|.......|...:..|.|::      |.|.:|...|.| |....|                .
  Rat     9 SLIIKDSSRPAPSLPESHPGPDFFIPLGMPSPLVMSVSGPGCPSRKSGAFCVCPLCVTSHLHSSR 73

  Fly   262 PPAGL----------------VRPFPMGPGGPPMPQGQ--PGLPDIKALPPYINA-PPELPPQHN 307
            ||||.                |..   |.|..|:.:.|  ||..|.:..|...:| .....|||:
  Rat    74 PPAGAGGGATGTAGAAVAGGGVAG---GTGALPLLKSQFSPGPGDAQFCPRVSHAHHHHHAPQHH 135

  Fly   308 PHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIF 372
            .|.....|...|||  |......|||||||.|.|.|.|     |..|..:|.:..
  Rat   136 HHHHQPQQPGSAAA--AAAAAAAAAAAAAALGHPQHHA-----PVCAATTYNVSD---------- 183

  Fly   373 PHRF-------PGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSET 430
            |.||       ..:..||   ..||:||||:.:|||:||..|.||.|:....|..:|..|||||.
  Rat   184 PRRFHCLTMGGSDTSQVP---NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEK 245

  Fly   431 QVKVWFQNRRTKHKRMQQEDEKGGEGGSQRNMH----------NGSGDEDDDELIDMEMDECPSD 485
            |||:||||||.|||       |.|:|.| ||.|          :.:..||:|.|.....:|   |
  Rat   246 QVKIWFQNRRVKHK-------KEGKGAS-RNNHASCKCVGSQAHYARSEDEDSLSPASANE---D 299

  Fly   486 EE 487
            :|
  Rat   300 KE 301

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	33/55 (60%)
Gsx2	NP_001131035.2	Homeodomain	204..260	CDD:459649	34/62 (55%)