DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and cad

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster


Alignment Length:457 Identity:98/457 - (21%)
Similarity:142/457 - (31%) Gaps:163/457 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LPYPHPH----------AQQQHLQAPHPHPHLSPAQQ--------HVLHQHLLMQQQHPGTPKSH 137
            |||...|          |.|.....|:.| |..|..|        |..|......|.:   ..||
  Fly     9 LPYTQKHSAANLAYASAAGQPWNWTPNYH-HTPPNHQFLGDVDSSHAAHHAAAAHQMY---YNSH 69

  Fly   138 QDIQELLQRLHHNAAMASGLSPLQTRLSPETEQPQMAVS---LKRERSPAPPAMEQAENPAQRIQ 199
                    .:.|:||.||         :.|...|..:.:   ::...:.|...|:|..:      
  Fly    70 --------HMFHSAAAAS---------AGEWHSPASSTADNFVQNVPTSAHQLMQQHHH------ 111

  Fly   200 PPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPA 264
              |....|.|..||..|||                                |||     ||.|..
  Fly   112 --HHAHASSSSASSGSSSS--------------------------------GGA-----PGAPQL 137

  Fly   265 GLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLG 329
            ..... .:|.||.....|..|..|        ..|...||.|..| ||.........:....:..
  Fly   138 NETNS-SIGVGGAGGGGGVGGATD--------GGPGSAPPNHQQH-IAEGLPSPPITVSGSEISS 192

  Fly   330 PAAAAAAAAGLP----PHAAQFMPNPGMARDSYQLYPWL---------LSRHGRIFPHRFPGSFL 381
            |.|..:|::  |    .|....:.|.....::....|..         :|.:.|..|.:      
  Fly   193 PGAPTSASS--PHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSK------ 249

  Fly   382 VPPF----RKP--------------------------------KRIRTAFSPSQLLKLEHAFESN 410
             ||:    :||                                .:.|..::..|.|:||..:.::
  Fly   250 -PPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTS 313

  Fly   411 QYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKGGEGGSQRN-MHNGSGDEDDDEL 474
            :|:....:..|||.|:|||.|||:||||||.|.::..::       ||..| |..|....|..:|
  Fly   314 RYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKK-------GSDPNVMGVGVQHADYSQL 371

  Fly   475 ID 476
            :|
  Fly   372 LD 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 23/55 (42%)
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 23/54 (43%)

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