DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and bsh

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster


Alignment Length:460 Identity:105/460 - (22%)
Similarity:152/460 - (33%) Gaps:130/460 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 LSPAQQHVLHQHLLMQQQHPG-------------TPKSHQDIQELLQRL-----HHNAAMASGLS 158
            ||||..|. |.:.........             ||.|.:.|  |.|.|     ::|::..:|::
  Fly     9 LSPADAHA-HANATTPTHSKAAAMASATTMLTTKTPFSIEHI--LFQNLNSASNNNNSSDTNGIA 70

  Fly   159 PLQTRLSPETEQPQMAVSLKRERSPAPPAMEQAENPAQRIQPPHT-PPKSVSPQSSQPSSSPTLL 222
            ......:|::.:.    ::|..||.........::|:|...||.: ||.|.|..::..:.|....
  Fly    71 ANTNNYAPKSSRN----AVKSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATATARSNQAA 131

  Fly   223 I--------SSPHATP-PQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGGPP 278
            .        .|.|:|| .....:....:|....:....|:|....|.:|...     |..|..||
  Fly   132 SGYAGEDYGKSMHSTPRSNHHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQ-----PQPPPPPP 191

  Fly   279 MPQGQPGLPDIKALPPYINAP-----------PELPPQHNPHLIAAAQFQMAAALQAGHVLGPAA 332
            :..|......:.    |.|||           ..|.|....:......|...|:|..|      |
  Fly   192 LNGGSGASNGVL----YPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGG------A 246

  Fly   333 AAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSP 397
            ....|.|..|..|..:   ||..::.        ||.|                 .::.||.||.
  Fly   247 PFFGAPGCVPELALGL---GMGVNAL--------RHCR-----------------RRKARTVFSD 283

  Fly   398 SQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKGGE------- 455
            .||..||..||..:|:...||..||..|.|||||||.||||||.|||:..:..:...|       
  Fly   284 PQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRS 348

  Fly   456 --GGSQRNMHNGSGDE--------------------------------DDDELIDMEMDECPSDE 486
              |.......:.|||.                                ..|:..|:|.|....|.
  Fly   349 EPGKQPGEATSSSGDSKHGKLNPGSVGGTPTQPTSEQQLQMCLMQQGYSTDDYSDLEADSGDEDN 413

  Fly   487 EHELD 491
            ..::|
  Fly   414 SSDVD 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 31/55 (56%)
bshNP_477350.2 Homeodomain 275..331 CDD:459649 31/55 (56%)

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