Protein Alignment ems and Vsx1

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Alignment Length: 535
• Identity: 121/535 - (22%)
• Similarity: 169/535 - (31%)
• Gaps: 183/535 - (34%)

  Fly    17 MPTPKQKIGFSIESIVGNDV--STAGGNSTPDLSGPQSPPPGERNVPGSPPQTPPATLTLIPGSP 79
            |...|.:..|:|:.|:|...  ..|..::||.    ::||        ||..|||.|..
  Fly     1 MQATKMRTPFAIQEILGLGAYQQQATASATPS----EAPP--------SPAATPPPTAN------ 47

  Fly    80 PHHLMAPPAHGLPYPHPHAQQQHLQAPHPHPHLSPAQQHVLHQHLLMQQQHPGTPKSHQDIQELL 144
                  .||:|........|||..|        ...||..|.|   .|||...:.:..:.|...:
  Fly    48 ------TPANGSLSAVQQQQQQQQQ--------QQQQQQQLQQ---QQQQAIDSLRESRSISPDV 95

  Fly   145 QRL-------------------------------------------HHNAAMASGLSPLQTRLSP 166
            .||                                           ||:....:..:.|:..|.|
  Fly    96 SRLSAAAAAAAAAAAHCQLPVFNPANFYAAAGYAAAADPGNAAAAHHHHMTTLAAAAYLRGFLPP 160

  Fly   167 ETEQP-------QMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSS----------- 213
            ....|       |.....:.....|....|.|.:.|.......:|.|:.|...:
  Fly   161 GFSTPHEFRGHFQQHFGAQFAEQAAARGQEYASSLANASGDEQSPSKNSSSSGNGGSGGSGSGSG 225

  Fly   214 --QPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGG 276
              .|:|:....:.||.|:....                .||||.....|............|.||
  Fly   226 GGNPTSNGLGHLGSPTASNGGS----------------GGGAGVGGSGGGSGTSGSNSSTSGNGG 274

  Fly   277 PPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAA---- 337
            .....|....|          |.|     |:...:||.|...|||..|.|   .|||||||
  Fly   275 NGGSSGSRSSP----------AGP-----HHSAALAAHQHAAAAAAAAHH---HAAAAAAAHHAH 321

  Fly   338 -----------AGLPPHAAQ--------------FMPNPGMARDSYQLYPWLLSRHGRIFPHRFP 377
                       |.:..|||.              |:...|.|..:...   ||:.||
  Fly   322 HAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNS---LLAAHG-------- 375

  Fly   378 GSFLVPP-------FRKPKRI--RTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVK 433
            |..||.|       .:|.||.  ||.|:.|||.:||.||:...|...:.|:.|:....|:|.:::
  Fly   376 GDVLVGPGGTGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQ 440

  Fly   434 VWFQNRRTKHKRMQQ 448
            ||:||||.|.::.::
  Fly   441 VWYQNRRAKWRKTEK 455

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	24/57 (42%)
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	23/56 (41%)