Protein Alignment ems and pdx1

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_571518.2
• Gene: pdx1 / 30721
• ZFINID: ZDB-GENE-990415-122
• Length: 246
• Species: Danio rerio
• Alignment Length: 263
• Identity: 73/263 - (27%)
• Similarity: 114/263 - (43%)
• Gaps: 59/263 - (22%)

  Fly   227 HATPPQQQ-------QQQPPPNY---PKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQ 281
            |..||...       |:.|..:|   |.|.:.            |..|..|...|:|      .|
Zfish     6 HYYPPNHLYKDSCAFQRHPNEDYSQNPPPCLY------------MRQAHSVYASPLG------AQ 52

  Fly   282 GQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQ 346
            .||.|.||.:.  .:::..:|...| .||...:|    .:||:   ||....:....|
Zfish    53 DQPNLTDITSY--NMSSRDDLAGPH-LHLPQTSQ----TSLQS---LGGYGDSLDLCG------- 100

  Fly   347 FMPNPGMARDSYQL-YPWLLS--RHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFE 408
                   .|:.|.| :||:.|  .|...:..::.|.::|.. .:.||.|||::.:|||:||..|.
Zfish   101 -------DRNRYHLPFPWMKSTKSHTHAWKGQWTGPYMVEA-EENKRTRTAYTRAQLLELEKEFL 157

  Fly   409 SNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKGGEG-GSQRNMHNGSGDEDDD 472
            .|:|:....|..||..|:|:|..:|:||||||.|.|:  :||::...| ..:::....|||..|:
Zfish   158 FNKYISRPRRVELALTLSLTERHIKIWFQNRRMKWKK--EEDKRRARGVDPEQDSSITSGDLKDE 220

  Fly   473 ELI 475
            ..:
Zfish   221 SCV 223

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	27/55 (49%)
pdx1	NP_571518.2	Homeodomain	138..194	CDD:459649	27/55 (49%)