DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and msx2b

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571351.3 Gene:msx2b / 30531 ZFINID:ZDB-GENE-980526-492 Length:241 Species:Danio rerio


Alignment Length:123 Identity:46/123 - (37%)
Similarity:65/123 - (52%) Gaps:13/123 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   334 AAAAAGLPPH-AAQFMPNPGMARDSYQLYPWLL-SRHGRIFPHRFPGSFLVP-PFRKPK---RIR 392
            :..:||:|.| ..|..|....:.:......|:: ||:.:.....       | |.||.|   :.|
Zfish    62 SCGSAGIPKHFMLQTSPVKSESPEPDDCTSWVMNSRYSQTRQES-------PCPLRKHKTNRKPR 119

  Fly   393 TAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQED 450
            |.|:.||||.||..|...||:..|||...:.:|.|:|||||:||||||.|.||:|:.:
Zfish   120 TPFTTSQLLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQNRRAKAKRLQEAE 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 30/58 (52%)
msx2bNP_571351.3 Homeodomain 116..172 CDD:459649 29/55 (53%)

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