DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and msx1a

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571348.1 Gene:msx1a / 30527 ZFINID:ZDB-GENE-980526-312 Length:233 Species:Danio rerio


Alignment Length:82 Identity:41/82 - (50%)
Similarity:52/82 - (63%) Gaps:6/82 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   375 RFPGSFLVP---PFRKPK---RIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVK 433
            ||..|.|.|   |.||.|   :.||.||.:|||.||..|...||:..|||...:.:|:|:|||||
Zfish    92 RFSPSRLSPPACPLRKHKTNRKPRTPFSTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 156

  Fly   434 VWFQNRRTKHKRMQQED 450
            :||||||.|.||:|:.:
Zfish   157 IWFQNRRAKAKRLQEAE 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 30/58 (52%)
msx1aNP_571348.1 Homeodomain 112..168 CDD:459649 29/55 (53%)

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