DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and rx1

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571300.2 Gene:rx1 / 30472 ZFINID:ZDB-GENE-990415-236 Length:330 Species:Danio rerio


Alignment Length:195 Identity:53/195 - (27%)
Similarity:78/195 - (40%) Gaps:57/195 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 GGPPMPQGQPGLPDIKALPPYINAPP-----ELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAA 334
            ||..:  |:||..| :.:.||.:.||     |.|..|:..:.:.         :....||....|
Zfish    65 GGESL--GEPGKLD-QRVQPYGHLPPLRDGSEQPTFHDADMFSN---------KCDGDLGDLRKA 117

  Fly   335 AAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQ 399
            ..:....|.:|          |..|                        |.:|.:|.||.|:..|
Zfish   118 IESDSKSPDSA----------DGEQ------------------------PKKKHRRNRTTFTTYQ 148

  Fly   400 LLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKGGEGGSQRNMHN 464
            |.:||.|||.:.|.....|:.||..:||.|.:|:|||||||.|.:|.::.|      .|...:|:
Zfish   149 LHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKID------ASTMKLHD 207

  Fly   465  464
            Zfish   208  207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 27/55 (49%)
rx1NP_571300.2 Octapeptide motif 37..44
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 66..104 12/40 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 118..142 7/57 (12%)
Homeodomain 138..194 CDD:459649 27/55 (49%)
OAR 302..318 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319
Nuclear localization signal. /evidence=ECO:0000255 312..316
Blue background indicates that the domain is not in the aligned region.

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