DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Hoxb1

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001094022.1 Gene:Hoxb1 / 303491 RGDID:1310298 Length:297 Species:Rattus norvegicus


Alignment Length:306 Identity:75/306 - (24%)
Similarity:102/306 - (33%) Gaps:92/306 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 PPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVR 268
            |....:|.|..|||:|        |......:.:.....|..|:....|. |:.   .||:.|..
  Rat    19 PSAYSAPTSFPPSSAP--------AVDSYAGESRYGGGLPSSALQQNSGY-PVQ---QPPSSLGV 71

  Fly   269 PFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAA 333
            .||..     .|.|.              ||....|.:.|    :..:.|..:...|....|::.
  Rat    72 SFPSS-----APSGY--------------APAACNPSYGP----SQYYSMGQSEGDGGYFHPSSY 113

  Fly   334 AAAAAGL------------------PPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSF 380
            .|...||                  ||:..:...|...|.|       |||..........|.|.
  Rat   114 GAQLGGLPDSYGAGGVGSGPYPPPQPPYGTEQTSNFASAYD-------LLSEDKESSCSSEPSSL 171

  Fly   381 LVPPF------RKPKR--------------IRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNL 425
            ....|      |.|.:              :||.|:..||.:||..|..|:|:..|.|..:|..|
  Rat   172 TARTFDWMKVKRNPPKTAKVSELGLGTPGGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL 236

  Fly   426 NLSETQVKVWFQNRRTKHKRMQQE------------DEKGGEGGSQ 459
            .|:|||||:||||||.|.|:.::|            .|..||...|
  Rat   237 ELNETQVKIWFQNRRMKQKKREREGGRVPAGPPGCPKEAAGEASDQ 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 27/69 (39%)
Hoxb1NP_001094022.1 None

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