Protein Alignment ems and Hoxb3

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001100512.1
• Gene: Hoxb3 / 303488
• RGDID: 1310780
• Length: 429
• Species: Rattus norvegicus
• Alignment Length: 305
• Identity: 71/305 - (23%)
• Similarity: 105/305 - (34%)
• Gaps: 99/305 - (32%)

  Fly   212 SSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPA--MMHPGGAGP----------MMMPGMPPA 264
            ||.|.|:.......|.  ||.|.......:|.:.|  :...|.|.|          .|.||:.|
  Rat    19 SSYPGSNGFGYDGPPQ--PPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAP- 80

  Fly   265 GLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLG 329
               .|.|..||.|| |...|                                 .:....:.:..|
  Rat    81 ---EPLPAPPGSPP-PSAAP---------------------------------TSTTSNSNNGGG 108

  Fly   330 PAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLL-SRHGRIFPHRFPGSF------------- 380
            |:.:.....|...::..          :.|::||:. ||......:..||:.
  Rat   109 PSKSGPPKCGASSNSTL----------TKQIFPWMKESRQTSKLKNSSPGTAEGCGGGGGGGGGG 163

  Fly   381 ----------------LVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSE 429
                            ..|.....||.|||::.:||::||..|..|:|:....|..:|..|||||
  Rat   164 GSSSGGGGSGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSE 228

  Fly   430 TQVKVWFQNRRTKHKRMQQ----EDEKGG---EGGSQRNMHNGSG 467
            .|:|:||||||.|:|:.|:    ....||   .|...:.|.:.:|
  Rat   229 RQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAG 273

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	28/55 (51%)
Hoxb3	NP_001100512.1	Homeodomain	188..244	CDD:459649	28/55 (51%)
		DUF4074	365..427	CDD:463833