DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and hoxa2b

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571181.1 Gene:hoxa2b / 30325 ZFINID:ZDB-GENE-990415-98 Length:363 Species:Danio rerio


Alignment Length:196 Identity:56/196 - (28%)
Similarity:74/196 - (37%) Gaps:48/196 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 PPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGP-AAAAAAAAGLPPHAAQFMPNPGMARD 356
            ||:....|.|.|..:|......|             .| .:....||.|||.             
Zfish    50 PPFEQTIPSLNPGSHPRHSRPKQ-------------NPNGSCPLPAASLPPE------------- 88

  Fly   357 SYQLYPWLLSRHG-------RIFPHRFPGSFLVPPFRKP----------KRIRTAFSPSQLLKLE 404
                |||:..:..       .......||.....|...|          :|:|||::.:|||:||
Zfish    89 ----YPWMKEKKASKKNQTTSTAATTDPGPLYFSPQGSPEISDGGSGATRRLRTAYTNTQLLELE 149

  Fly   405 HAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKGGEGGSQRNMHNGSGDE 469
            ..|..|:|:....|..:|..|:|:|.||||||||||.||||..|..|.....|...::....|..
Zfish   150 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHHGDGKPPSLEEAGGRG 214

  Fly   470 D 470
            |
Zfish   215 D 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 29/55 (53%)
hoxa2bNP_571181.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..132 20/111 (18%)
Antp-type hexapeptide 88..93 3/21 (14%)
Homeodomain 134..190 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..218 9/30 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 245..279
Blue background indicates that the domain is not in the aligned region.

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