DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Alx4

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001100023.1 Gene:Alx4 / 296511 RGDID:1310201 Length:399 Species:Rattus norvegicus


Alignment Length:230 Identity:61/230 - (26%)
Similarity:82/230 - (35%) Gaps:68/230 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 QQQPPPNYPKPAMMHPGGAGPMMMPGMPPA------GLVRPFPMGPGGPPMPQGQPGLPDIKALP 293
            |.|||...|.||            |..|||      |..:..|  .|...:.:|..|......:|
  Rat    91 QPQPPTPQPPPA------------PPAPPAHLYLQRGACKTPP--DGSLKLQEGSGGHNAALQVP 141

  Fly   294 PYIN----APPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMA 354
            .|..    ..|||||...|           ..:...::   :.....|.|....|...:|:|...
  Rat   142 CYAKESNLGEPELPPDSEP-----------VGMDNSYL---SVKETGAKGPQDRAGAEIPSPLEK 192

  Fly   355 RDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERK 419
            .||.       |..|                 |.:|.||.|:..||.:||..|:...|.....|:
  Rat   193 TDSE-------SSKG-----------------KKRRNRTTFTSYQLEELEKVFQKTHYPDVYARE 233

  Fly   420 ALAQNLNLSETQVKVWFQNRRTKHKR------MQQ 448
            .||...:|:|.:|:|||||||.|.::      |||
  Rat   234 QLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQ 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 24/55 (44%)
Alx4NP_001100023.1 Homeodomain 203..259 CDD:459649 24/55 (44%)
OAR 375..393 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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