Protein Alignment ems and Hoxd1

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 273
• Identity: 70/273 - (25%)
• Similarity: 96/273 - (35%)
• Gaps: 85/273 - (31%)

  Fly   244 KPAMMHPG---GAGPMMMPGMPPAGLVRPFPMGPGGPPMPQG-QP-----------GLPDIKALP 293
            :|..:.|.   |:|........|....||.|..|..|..|.| ||           |..:..|.|
  Rat    36 RPVALQPAFPLGSGDGAFVSCLPLAAARPTPSPPVAPAQPPGPQPAASRYAPCTLEGAYERGAAP 100

  Fly   294 ------------PYINAPPEL---PPQHNPHL--------------IAAAQFQMAAALQA----- 324
                        |..:.|..|   .....||:              :.:.|...||..:.
  Rat   101 ASAAEYGFLGSGPAFDFPGALGRAADDSGPHVHYATSAVFSSGGSFLLSGQVDFAAFAEPGPFPA 165

  Fly   325 -------GHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWL-----------LSRHGRI 371
                   ||. ||....:.|.|..|..|.  |..|:.. ::..:.|:           ||.:|..
  Rat   166 CLKEPADGHP-GPFQTVSPAPGACPKPAS--PTSGLPA-AHSTFEWMKVKRNAPKKSKLSEYGAT 226

  Fly   372 FPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWF 436
            .|              ...|||.||..||.:||..|..|:|:..|.|..:|..|.|::||||:||
  Rat   227 SP--------------SSAIRTNFSTKQLTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWF 277

  Fly   437 QNRRTKHKRMQQE 449
            ||||.|.|:.::|
  Rat   278 QNRRMKQKKRERE 290

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	28/55 (51%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	34/97 (35%)
		Homeodomain	233..286	CDD:459649	27/52 (52%)