Protein Alignment ems and Msx2

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_037114.2
• Gene: Msx2 / 25483
• RGDID: 3116
• Length: 267
• Species: Rattus norvegicus
• Alignment Length: 208
• Identity: 69/208 - (33%)
• Similarity: 97/208 - (46%)
• Gaps: 41/208 - (19%)

  Fly   263 PAGLVRPFPMGPGGPPMPQGQPGLPD----IKALPPYINA--PPELPPQHNPHLIAAAQFQMAAA 321
            ||.|..|.| ||||     .:.|..:    :.:||..:.|  ..:.||:.:|    |.....|:
  Rat    18 PAVLAGPGP-GPGG-----AEGGAEERRVKVSSLPFSVEALMSDKKPPKESP----AVPPDCAS- 71

  Fly   322 LQAGHVLGPAAAAAAAAGLPPHAAQFMPNPG-----------MARDSYQLYPWLLSRHGRIFP-- 373
              ||.||.|..       ||.|..:...:||           .:.:|....|| :...||..|
  Rat    72 --AGAVLRPLL-------LPGHGVRDAHSPGPLVKPFETASVKSENSEDGAPW-IQEPGRYSPPP 126

  Fly   374 -HRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQ 437
             |..|.:..:...:..::.||.|:.||||.||..|...||:..|||...:.:|||:|||||:|||
  Rat   127 RHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQ 191

  Fly   438 NRRTKHKRMQQED 450
            |||.|.||:|:.:
  Rat   192 NRRAKAKRLQEAE 204

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	30/55 (55%)
Msx2	NP_037114.2	Homeodomain	143..199	CDD:459649	30/55 (55%)