Protein Alignment ems and Hoxc8

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001170797.2
• Gene: Hoxc8 / 24460
• RGDID: 2821
• Length: 242
• Species: Rattus norvegicus
• Alignment Length: 198
• Identity: 48/198 - (24%)
• Similarity: 73/198 - (36%)
• Gaps: 53/198 - (26%)

  Fly   327 VLGPAAAAAAAAGLPPHAAQFMPN--PGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVP------ 383
            |.||..:|........|...|..:  .|::...||..|..||.||.  ..:|.|...:|
  Rat    39 VYGPGGSAPGFQHASHHVQDFFHHGTSGISNSGYQQNPCSLSCHGD--ASKFYGYEALPRQSLYG 101

  Fly   384 --------------------------------------PFRKP-----KRIRTAFSPSQLLKLEH 405
                                                  |:.:|     :..|..:|..|.|:||.
  Rat   102 AQQEASVVQYPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEK 166

  Fly   406 AFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKGGEGGSQRNMHNGSGDED 470
            .|..|.|:....|..::..|.|:|.|||:||||||.|.|:...:|:..|....::....|:.:|:
  Rat   167 EFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARDEEKVEEEGNEEEE 231

  Fly   471 DDE 473
            .:|
  Rat   232 KEE 234

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	23/55 (42%)
Hoxc8	NP_001170797.2	Homeodomain	150..206	CDD:459649	23/55 (42%)