Protein Alignment ems and Hoxc4

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001103354.1
• Gene: Hoxc4 / 24459
• RGDID: 1586210
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 266
• Identity: 70/266 - (26%)
• Similarity: 97/266 - (36%)
• Gaps: 83/266 - (31%)

  Fly   198 IQPPHTPPKSVSPQSSQPSSSP-----TLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMM 257
            |.|...|.:..|..|..|..||     |......|    ..|:..|||
  Rat    13 IDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQH----HHQELYPPP----------------- 56

  Fly   258 MPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAAL 322
                ||.            |..|:.|.....::.        |.....|.|             .
  Rat    57 ----PPR------------PSYPERQYSCTSLQG--------PGNSRAHGP-------------A 84

  Fly   323 QAGH--------VLGPA---AAAAAAAGLPPHAAQFMPNPGMARDSYQ--LYPWLLSRHGRIFPH 374
            ||||        :..||   .|:|:.:..||..:|..|:...:..|.|  :|||:...|......
  Rat    85 QAGHHHPEKSQPLCEPAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNP 149

  Fly   375 RFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNR 439
            .:.|.       :|||.|||::..|:|:||..|..|:|:....|..:|.:|.|||.|:|:|||||
  Rat   150 NYNGG-------EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNR 207

  Fly   440 RTKHKR 445
            |.|.|:
  Rat   208 RMKWKK 213

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	27/55 (49%)
Hoxc4	NP_001103354.1	Homeodomain	157..213	CDD:459649	27/55 (49%)