Protein Alignment ems and Hoxb8

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001178578.1
• Gene: Hoxb8 / 24457
• RGDID: 1586211
• Length: 243
• Species: Rattus norvegicus
• Alignment Length: 256
• Identity: 64/256 - (25%)
• Similarity: 92/256 - (35%)
• Gaps: 60/256 - (23%)

  Fly   254 GPMMMPGMPPAGLVRPFPMGPGGPPM----PQGQPGLPDIKALPPYINAPPEL---PPQHNPHLI 311
            |..:.|.....|    |....||.|.    |...........:..:.:.|..|   |.|.||..:
  Rat    16 GESLRPNYYDCG----FAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAV 76

  Fly   312 AA----AQFQMAAALQAGHVLGPA---------AAAAAAAGLPPHA--AQFMPNPGMARDSYQLY 361
            |.    ..|.....||...:.|..         ...|||:||...|  ::..|:|      .||:
  Rat    77 ACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSP------TQLF 135

  Fly   362 PWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLN 426
            ||:.       |....|.         :|.|..:|..|.|:||..|..|.|:....|..::..|.
  Rat   136 PWMR-------PQAAAGR---------RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALG 184

  Fly   427 LSETQVKVWFQNRRTKHKRMQQEDEKGGEGGSQRNMHNGSGDEDDDELIDMEMDECPSDEE 487
            |:|.|||:||||||.|.|:...:|:            ..|...:.:||...:::..|...|
  Rat   185 LTERQVKIWFQNRRMKWKKENNKDK------------FPSSKCEQEELEKEKLERAPETAE 233

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	24/55 (44%)
Hoxb8	NP_001178578.1	Homeodomain	147..203	CDD:459649	24/55 (44%)