DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Hoxc10

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_034592.2 Gene:Hoxc10 / 209448 MGIID:96192 Length:342 Species:Mus musculus


Alignment Length:376 Identity:76/376 - (20%)
Similarity:122/376 - (32%) Gaps:138/376 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 QRLHHNAAM--------------ASGLSPLQTRLSPETE--QPQMAVSLKRERSPAPPAMEQAEN 193
            :|.:.||.|              ..||:|   .||...|  .|.:|:      :..|..:.|.::
Mouse    23 ERYNRNAGMYMQSGSDFNCGVMRGCGLAP---SLSKRDEGGSPNLAL------NTYPSYLSQLDS 78

  Fly   194 -----PAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGA 253
                 .|.|::.|          ..:|.||.:.        ||..:::.....|........|  
Mouse    79 WGDPKAAYRLEQP----------VGRPLSSCSY--------PPSVKEENVCCMYSAEKRAKSG-- 123

  Fly   254 GPMMMPGMPPAGLVRPFPMGPGGPPMPQ---GQPGLPDIKALPPYINAPPELPP-QHNPHLIAA- 313
                    |.|.|.        ..|:|:   |:..:|    :|.|..|.|.... ...||...| 
Mouse   124 --------PEAALY--------SHPLPESCLGEHEVP----VPSYYRASPSYSALDKTPHCAGAN 168

  Fly   314 ---AQFQMAAAL--QAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLY------------ 361
               |.|:..|:|  :..|:..|......:....|.:....|:|...:....|.            
Mouse   169 EFEAPFEQRASLNPRTEHLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKASPSESEKE 233

  Fly   362 ---------------------------PWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQ 399
                                       .||.::.||                   :.|..::..|
Mouse   234 RAKTADSSPDTSDNEAKEEIKAENTTGNWLTAKSGR-------------------KKRCPYTKHQ 279

  Fly   400 LLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQED 450
            .|:||..|..|.|:....|..:::.:||::.|||:||||||.|.|:|.:|:
Mouse   280 TLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNREN 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 21/55 (38%)
Hoxc10NP_034592.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..271 10/103 (10%)
Homeodomain 269..325 CDD:459649 22/74 (30%)
Blue background indicates that the domain is not in the aligned region.

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