DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Pdx1

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_032840.1 Gene:Pdx1 / 18609 MGIID:102851 Length:284 Species:Mus musculus


Alignment Length:325 Identity:84/325 - (25%)
Similarity:114/325 - (35%) Gaps:118/325 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 EQPQMAVSLKR-----ERSPAPPAMEQAENPAQ-----RIQPPHTPPKSVSPQSSQPSSSPTLLI 223
            ||...|..|.:     :|.|.|   |.:.||..     |..||..||:..|...|....||..: 
Mouse     5 EQYYAATQLYKDPCAFQRGPVP---EFSANPPACLYMGRQPPPPPPPQFTSSLGSLEQGSPPDI- 65

  Fly   224 SSPHATPPQQQQQQPPPNYPKPAMMH---PGGAGPMMMPGMPPAGLVRPFPMG--PGGPPMPQGQ 283
             ||:..||.....      |..|.:|   |...|    ...||.|   |||.|  |||...|.  
Mouse    66 -SPYEVPPLASDD------PAGAHLHHHLPAQLG----LAHPPPG---PFPNGTEPGGLEEPN-- 114

  Fly   284 PGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFM 348
                           ..:||                                             
Mouse   115 ---------------RVQLP--------------------------------------------- 119

  Fly   349 PNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYV 413
                        :||:.|.....:..::.|........:.||.|||::.:|||:||..|..|:|:
Mouse   120 ------------FPWMKSTKAHAWKGQWAGGAYTAEPEENKRTRTAYTRAQLLELEKEFLFNKYI 172

  Fly   414 VGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEK-------GGEGGS--QRNMHNGSGDE 469
            ....|..||..|||:|..:|:||||||.|.|:  :||:|       ||.||.  :::....||:|
Mouse   173 SRPRRVELAVMLNLTERHIKIWFQNRRMKWKK--EEDKKRSSGTPSGGGGGEEPEQDCAVTSGEE 235

  Fly   470  469
            Mouse   236  235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 28/55 (51%)
Pdx1NP_032840.1 Transactivation domain. /evidence=ECO:0000250 13..73 19/64 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 30..116 31/117 (26%)
Antp-type hexapeptide 119..124 3/61 (5%)
Homeodomain 148..204 CDD:459649 28/55 (51%)
Nuclear localization signal 198..204 3/5 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 202..284 11/36 (31%)

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