DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Nkx6-1

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_659204.1 Gene:Nkx6-1 / 18096 MGIID:1206039 Length:365 Species:Mus musculus


Alignment Length:372 Identity:100/372 - (26%)
Similarity:136/372 - (36%) Gaps:119/372 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 APP-----AMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYP 243
            :||     :|.:.:.|   :.|...||....|.||..|||.:   |||          .||....
Mouse    19 SPPLAALHSMAEMKTP---LYPAAYPPLPTGPPSSSSSSSSS---SSP----------SPPLGSH 67

  Fly   244 KPAMMHPGGAGPMMMPGMPPAGLVRPFPMG------------PGGPPMPQGQP------------ 284
            .|..:.|..||.:...|.||..|....|.|            ..|..:|...|            
Mouse    68 NPGGLKPPAAGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSAS 132

  Fly   285 ---------------------------GLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAAL 322
                                       |||...:|     :||..||                  
Mouse   133 ATSASAAAAAAAAAAAAAASSPAGLLAGLPRFSSL-----SPPPPPP------------------ 174

  Fly   323 QAGHVLGPAAAAAAAAGLPPHAAQFMPN------PGMARDSYQLYPWLLSRHGRI--FPHRFPGS 379
              |....|:|||.||.|..|.....:|.      ||:    .|..||   |..|:  .||:  ||
Mouse   175 --GLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGV----MQSPPW---RDARLACTPHQ--GS 228

  Fly   380 FLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHK 444
            .|:....|.|..|..||..|:..||..||..:|:.|.||..||.:|.::|:||||||||||||.:
Mouse   229 ILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWR 293

  Fly   445 RMQQED----EKGGEGGSQRNMHNGSGDEDDDELIDMEMDECPSDEE 487
            :....:    :|..:..::|.......:||||: .:..:|....||:
Mouse   294 KKHAAEMATAKKKQDSETERLKGTSENEEDDDD-YNKPLDPNSDDEK 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 29/55 (53%)
Nkx6-1NP_659204.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 27/113 (24%)
Repressor domain. /evidence=ECO:0000250 102..269 47/200 (24%)
Homeodomain 236..294 CDD:459649 30/57 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 9/46 (20%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 8/34 (24%)

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