Protein Alignment ems and pal-1

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001021209.1
• Gene: pal-1 / 175638
• WormBaseID: WBGene00003912
• Length: 270
• Species: Caenorhabditis elegans
• Alignment Length: 311
• Identity: 83/311 - (26%)
• Similarity: 125/311 - (40%)
• Gaps: 78/311 - (25%)

  Fly   173 MAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVS-PQSSQPSSSPTLLISSPHATPPQQQQQ 236
            |:|.:|.:.|         ||.:.....|.|.|..|: |.      .|.:....||  |.:::..
 Worm     1 MSVDVKSDFS---------ENESSSTPSPTTVPADVTWPH------YPMMPFMQPH--PLREKML 48

  Fly   237 QP---PPNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQ----GQ-PGLPDIKALP 293
            ||   |..|.:.:.|  |..|....|.:.|.||             ||    || |.:..:...|
 Worm    49 QPTFDPQIYGRWSQM--GDTGFYGHPDLYPFGL-------------PQLAANGQIPAVEAVDVKP 98

  Fly   294 PYIN-----------APPE-LPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAA- 345
            |..|           :|.: :.|..:....||:..::            :|||||||.....||
 Worm    99 PLSNGSSSSDSGMYPSPSDMMTPFPSTSSGAASSSEL------------SAAAAAAANYQMRAAT 151

  Fly   346 --QFMPNPGMARDSYQLYPW---LLSRHGRIFPHRFPGSFL-VPPFRKPKRIRTA------FSPS 398
              |....|.|....:|.:.|   |.:.||:.......|..| ..|.....|:|||      :|..
 Worm   152 CYQQSVWPFMDYQQFQGFSWKMPLGNNHGKDRRSSSDGKTLPTGPGTNNVRVRTADKYRMVYSDY 216

  Fly   399 QLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQE 449
            |.|:||..|.::.::....:..|:..|:|:|.|:|:||||||.|.:|.:|:
 Worm   217 QRLELEKEFHTSPFITSDRKSQLSTMLSLTERQIKIWFQNRRAKDRRDKQK 267

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	23/61 (38%)
pal-1	NP_001021209.1	Homeodomain	208..263	CDD:459649	19/54 (35%)