DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and Hoxa3

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:313 Identity:83/313 - (26%)
Similarity:116/313 - (37%) Gaps:95/313 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 PHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMM--HPGG----------- 252
            |:......:..:||...:|:..:.:...     :..:|..:...||..  ||..           
Mouse    17 PYQAANGFAYNASQQPYAPSAALGTDGV-----EYHRPACSLQSPASAGGHPKTHELSEACLRTL 76

  Fly   253 AGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQ 317
            :||   |..|| ||..|    |..||.||..|..|.    ||   .||..||...          
Mouse    77 SGP---PSQPP-GLGEP----PLPPPPPQAAPPAPQ----PP---QPPPQPPAPT---------- 116

  Fly   318 MAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDS---------YQLYPWLL-SRH---- 368
                        |||....::..||.:|...|.|.....|         .|::||:. ||.    
Mouse   117 ------------PAAPPPPSSVSPPQSANSNPTPASTAKSPLLNSPTVGKQIFPWMKESRQNTKQ 169

  Fly   369 ---GRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSET 430
               |........|....|.....||.|||::.:||::||..|..|:|:....|..:|..|||:|.
Mouse   170 KTSGSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTER 234

  Fly   431 QVKVWFQNRRTKHKRMQQEDEKG-------------------GEGGSQRNMHN 464
            |:|:||||||.|:|:    |:||                   |.||...:||:
Mouse   235 QIKIWFQNRRMKYKK----DQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 27/55 (49%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 30/113 (27%)
Antp-type hexapeptide 156..161 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 7/33 (21%)
COG5576 <182..309 CDD:227863 38/106 (36%)
Homeodomain 193..249 CDD:459649 27/55 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 9/40 (23%)
DUF4074 378..441 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443
Blue background indicates that the domain is not in the aligned region.

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