Protein Alignment ems and Hoxa11

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001123350.1
• Gene: Hoxa11 / 103692131
• RGDID: 1564605
• Length: 313
• Species: Rattus norvegicus
• Alignment Length: 296
• Identity: 68/296 - (22%)
• Similarity: 108/296 - (36%)
• Gaps: 75/296 - (25%)

  Fly   199 QPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPN----YPKPAMMH------PGGA 253
            |.|.:.|.:.|..|:.|...|...::..........:..|..|    |....::|      |..|
  Rat    37 QTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAA 101

  Fly   254 GPMMMPG------------MPPAGLVRPF--PMGPGGPPMPQG-------QPGLPDIKALPPYIN 297
            |   :||            .|...:...|  .:|..| .:||.       ..|.|:..|...|
  Rat   102 G---VPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNG-VLPQAFDQFFETAYGTPENLASSDY-- 160

  Fly   298 APPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYP 362
             |.:...:..|        ..|||..|      ||.||||.|.|..::......|..:::
  Rat   161 -PGDKNAEKGP--------PTAAATSA------AAVAAAATGAPATSSSDGGGGGGCQEA----- 205

  Fly   363 WLLSRHGRIFPHRFPGSFLVPPF--------------RKPKRIRTAFSPSQLLKLEHAFESNQYV 413
             ......|   .|.|.|...|..              ::.::.|..::..|:.:||..|..:.|:
  Rat   206 -AAEEKER---RRRPESSSSPESSSGHTEDKAGGSGGQRTRKKRCPYTKYQIRELEREFFFSVYI 266

  Fly   414 VGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQE 449
            ...:|..|::.|||::.|||:||||||.|.|::.::
  Rat   267 NKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRD 302

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	21/55 (38%)
Hoxa11	NP_001123350.1	DUF3528	26..154	CDD:432284	24/120 (20%)
		Homeodomain	242..298	CDD:459649	21/55 (38%)