DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and rax2

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:XP_002941436.1 Gene:rax2 / 100494721 XenbaseID:XB-GENE-494483 Length:227 Species:Xenopus tropicalis


Alignment Length:65 Identity:29/65 - (44%)
Similarity:42/65 - (64%) Gaps:0/65 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   384 PFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQ 448
            |.:|.:|.||.|:..||.:||.|||.:.|.....|:.||..::|.|.:|:|||||||.|.:|.::
 Frog    32 PKKKHRRNRTTFTTYQLHELERAFERSHYPDVYSREELAMKVSLPEVRVQVWFQNRRAKWRRQEK 96

  Fly   449  448
             Frog    97  96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 26/55 (47%)
rax2XP_002941436.1 Homeodomain 37..93 CDD:459649 26/55 (47%)
OAR 200..216 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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