Protein Alignment ems and hoxc5

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: XP_002936695.2
• Gene: hoxc5 / 100487879
• XenbaseID: XB-GENE-485672
• Length: 225
• Species: Xenopus tropicalis
• Alignment Length: 217
• Identity: 56/217 - (25%)
• Similarity: 80/217 - (36%)
• Gaps: 63/217 - (29%)

  Fly   242 YPKPAMMHPGGAGPMMMPGMPPAGLVRP--FPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPP 304
            :|.|...:...|  :.||..|.|...||  ..||..|..:.:|:
 Frog    49 FPSPGSSNSLSA--LDMPSNPNANSERPSCTVMGSSGHTVGRGE--------------------- 90

  Fly   305 QHNPHLIAAAQFQMAAALQAGHVLGPAAAAA------AAAGLPPHAAQFMPNPGMARDSY----- 358
                          .:||.:|.....||..:      ....:....||..|..|..:...
 Frog    91 --------------QSALNSGIYNQKAATTSLEERSKGIESIKTEPAQSTPQGGQPQQQQQQQPP 141

  Fly   359 QLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQ 423
            |:|||:...|   ..|...|          ||.||:::..|.|:||..|..|:|:....|..:|.
 Frog   142 QIYPWMTKLH---MSHETDG----------KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAN 193

  Fly   424 NLNLSETQVKVWFQNRRTKHKR 445
            ||.|:|.|:|:||||||.|.|:
 Frog   194 NLCLNERQIKIWFQNRRMKWKK 215

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	26/55 (47%)
hoxc5	XP_002936695.2	Homeodomain	159..215	CDD:459649	26/55 (47%)