Protein Alignment ems and Hoxb2

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001386664.1
• Gene: Hoxb2 / 100361765
• RGDID: 2319509
• Length: 355
• Species: Rattus norvegicus
• Alignment Length: 288
• Identity: 80/288 - (27%)
• Similarity: 105/288 - (36%)
• Gaps: 109/288 - (37%)

  Fly   212 SSQPS------SSPTLL-------ISSPHATPPQQQQQQPPP---NYP----------KPAMMHP 250
            :||||      |.|.:|       |......||     .|||   .:|          :|....|
  Rat    13 NSQPSLAECLTSFPAVLETFQTSSIKESTLIPP-----PPPPLEQTFPSLQLGASTLQRPGSQKP 72

  Fly   251 GGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQ 315
            .|.||.:.|  ||     |.|:.|..|..|..:                 |......|...||..
  Rat    73 AGDGPALRP--PP-----PLPVAPPAPEFPWMK-----------------EKKSAKKPSQSAATP 113

  Fly   316 FQMAAALQAGHVLGPAAAAAAAAGL-PPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGS 379
                         .|||::..|:|: .|.....:|..|.:                       ||
  Rat   114 -------------SPAASSVRASGVGSPSDGPGLPESGGS-----------------------GS 142

  Fly   380 FLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHK 444
                     :|:|||::.:|||:||..|..|:|:....|..:|..|:|:|.||||||||||.|||
  Rat   143 ---------RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 198

  Fly   445 RMQQEDE-KGGEGGSQRNMHNGSGDEDD 471
            |..|..| ..||.|       |...:||
  Rat   199 RQTQHREPPDGEPG-------GLSAQDD 219

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	29/55 (53%)
Hoxb2	NP_001386664.1	Homeodomain	143..199	CDD:459649	29/55 (53%)