DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and hoxc3

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:XP_002936696.1 Gene:hoxc3 / 100190990 XenbaseID:XB-GENE-5997986 Length:394 Species:Xenopus tropicalis


Alignment Length:208 Identity:61/208 - (29%)
Similarity:92/208 - (44%) Gaps:38/208 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 PFPMGPGGPPMPQGQPGLPDIKALPPYIN------APPELPPQHNPHLIAAAQFQMAAALQAGHV 327
            ||.:.|..........|...||.:..:::      ..|:.|...:| |..:|..|...:.::   
 Frog    43 PFCLPPDTANGSASHKGEHSIKGIDFHLSEVSEQAQQPKSPNSDSP-LPKSASTQSCTSKKS--- 103

  Fly   328 LGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLL-----SRHGRIFP------HRFPGSFL 381
            .||.::...:.......:. ||.        |::||:.     |:..:..|      .....|||
 Frog   104 TGPVSSDVTSPNKKSKGSN-MPK--------QIFPWMKETRQNSKQKKQAPPPADDAPAVDSSFL 159

  Fly   382 VPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRM 446
               ....||.|||::.|||::||..|..|:|:....|..:|:.|||||.|:|:||||||.|.|: 
 Frog   160 ---SSASKRARTAYTNSQLVELEKEFHFNRYLCRPRRLEMAKLLNLSERQIKIWFQNRRMKFKK- 220

  Fly   447 QQEDEKG-GEGGS 458
               |.|| |.|||
 Frog   221 ---DHKGKGGGGS 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 29/55 (53%)
hoxc3XP_002936696.1 Homeodomain 164..220 CDD:459649 29/55 (53%)
DUF4074 335..392 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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